Studies on mammalian adenosine kinase and related enzymes
Adenosine kinase (AK) is a key enzyme responsible for maintaining the intracellular concentrations of adenosine (Ado), which shows potent cardioprotective and neuromodulatory activities. Many different types of mutants affected in AK have been isolated in my lab. The AK gene in mammalian cells is very large and the ratio of non-coding to coding sequence for this gene (>500) is highest of all known genes in mammalian cells. The AK gene in mammalian cells is also linked in a head-to-head manner with the gene for the mu3A adaptor protein, which is affected in the Herman-Pudlak syndrome. Both these genes are transcribed from a single bi-directional promoter. Many of the AK mutants that we have isolated contain large deletions in the AK gene some of which extends into the neighboring mu3A gene. Other mutants involve specific point mutations affecting the biochemical properties of the enzyme.
Another novel property of AK that we have discovered, which it shares with a few other enzymes, is that its activity in different organisms is completely dependent upon the presence of pentavalent ions. Our work has led to identification of many novel compounds, which compete with pentavalent ion and act as either activators or inhibitors of AK. The inhibitors of AK are of great interest due to their potential cardioprotective and neuromodulatory effect.
A variety of studies on AK and related enzymes have been carried out to understand its mechanism of action and to identify potent inhibitors of the enzyme with therapeutic potential. These studies include:
- Relationship of AK-mu3A gene alterations to Herman-Pudlak Syndrome
- Molecular characterization of human cell mutants affected in AK
- Understanding the molecular mechanism by which phosphorus and other pentavalent ions stimulate AK activity. Structural studies on AK have also been carried out to determine the binding site of pentavalent ions.
- Screening of various chemical libraries to identify different novel inhibitors of AK, and to characterize the mechanism of action of these inhibitors
- Biochemical studies on other enzymes that are similar to AK also show pentavalent ion dependency
The amino acid sequences of these two isoforms in human, mouse and rat are identical except for the sequence at the N-terminus region (NTS). The NTS of adenosine kinase (AdK)-long in these species is highly conserved with complete conservation of the central basic cluster (PKPKKLK).
About 40 μg of total protein from various cell lines: Chinese hamster ovary (CHO), a human epithelial cell line derived from cervix (HeLa), a human epithelial cell line from connective tissue (HT-1080) and a fibroblastic cell line of connective tissue (LMTK) was loaded onto 12 per cent sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE gels).
After electrophoresis and transfer of proteins to nitrocellulose membrane, the blot was reacted with 1:1000 dilution of rabbit polyclonal antibody to adenosine kinase. The blot was treated with a secondary antibody conjugated to horseradish peroxidase and the cross-reactive bands were visualized by chemiluminescence.
Immunofluorescence localization of adenosine kinase in the (a) HT-1080, (b) HeLa, (c) LM (TK−) and (d) CHO cell lines using the AdK-antibody. In HeLa and CHO cells, which contain only the long isoform of AdK, immunofluorescence labeling was mainly observed in the nucleus.
Publications
- Cui, X. A., Agarwal, T., Singh, B. and Gupta, R. S. (2011) Molecular characterization of chinese hamster cells mutants affected in adenosine kinase and showing novel genetic and biochemical characteristics. BMC Biochem. 12(1): 22.
- Cui, X. A., Singh, B., Park, J. and Gupta, R. S. (2009) Subcellular localization of adenosine kinase in mammalian cells: The long isoform of AdK is localized in the nucleus. Biochem Biophys Res Commun. 388(1): 46-50.
- Park, J., Singh, B. and Gupta, R. S. (2009) Mycobacterial adenosine kinase is not a typical adenosine kinase. FEBS Lett. 583(13):2231-6.
- Park, J. and Gupta, R. S. (2008) Adenosine kinase and ribokinase–the RK family of proteins. Cell Mol Life Sci. 65(18): 2875-96.
- Park, J., van Koeverden, P., Singh, B. and Gupta, R. S. (2007) Identification and characterization of human ribokinase and comparison of its properties with E. coli ribokinase and human adenosine kinase. FEBS Lett. 581(17): 3211-6.
- Park, J., Vaidyanathan, G., Singh, B. and Gupta, R.S. (2007) Identification and biochemical studies on novel non-nucleoside inhibitors of the enzyme adenosine kinase. The Protein Journal. Jan 5 [Epub].
- Park, J., Singh, B. and Gupta, R. S. (2006) Inhibition of adenosine kinase by phosphonate and bisphosphonate derivatives. Mol. Cell. Biochem. 283: 11-21.
- Singh , B. and Gupta, R. S. (2004) Genomic organization and linkage via a bidirectional promoter of the AP-3 (adaptor protein-3) mu3A and AK (adenosine kinase) genes: deletion mutants of AK in Chinese hamster cells extend into the AP-3 mu3A gene. Biochemical Journal 378: 519-528.
- Park, J., Singh, B., Maj, M. and Gupta, R. S. (2004) Phosphorylated derivatives that activate or inhibit mammalian adenosine kinase provide insights into the role of pentavalent ions in AK catalysis. J. Protein Chemistry 23: 167-177.
- Maj, M.C., Singh, B. and Gupta, R. S. (2002) Pentavalent ions dependency is a conserved property of adenosine kinase from diverse sources: identification of a novel motif implicated in phosphate and magnesium ion binding and substrate inhibition. Biochemistry, 41: 4059-69. [Abstract]
- Singh, B., Lin, A., Wu, Z.C. and Gupta,R.S. (2001) Gene structure for adenosine kinase in Chinese hamster and human : high-frequency mutants of CHO cells involve deletions of several introns and exons. DNA and Cell Biol. 20: 53-65.
- Maj, M. and Gupta, R.S. (2001) The effect of inorganic phosphate on the activity of bacterial ribokinase. J. Prot. Chem 20: 139-144.
- Maj, M., Singh, B. and Gupta, R.S. (2000) Structure-activity studies on mammalian adenosine kinase. Biochem. Biophys. Res. Commun. 275:386-393.
- M. Maj, B. Singh and Gupta, R.S. (2000) The influence of inorganic phosphate on the activity of adenosine kinase. Biochem. Biophys. Acta. 1476: 33-42.
- Hao, W. and Gupta, R.S. (1996) Pentavalent ion dependency of mammalian adenosine kinase. Biochem. Mol. Biol. International 38: 889-899.
- Gupta, R.S. (1996) Adenosine-AMP exchange activity is an integral part of the mammalian adenosine kinase. Biochem. Mol. Biol. Internat. 39: 493-502.
- Singh, B., Hao, W., Wu, Z-C., Eigle, B. and Gupta, R.S. (1996) Cloning and characterization of cDNA for adenosine kinase from mammalian (Chinese hamster, mouse, human and rat) species. High frequency mutants of Chinese hamster ovary cells involve structural alterations in the gene. E.J. Biochem. 241: 564-571.
- Gupta, R.S. (1989) Purine nucleoside analogs. In “Drug Resistance in Mammalian Cells” Vol. I, Gupta, R.S. (ed.) CRC Press, pp. 89-110.
- Gupta, R.S. and Mehta, K.D. (1986). Genetic and biochemical characteristics of three different types of mutants of mammalian cells affected in adenosine kinase. In Purine Metabolism in Man V. (W.L. Nyhan, ed.)., Plenum Press, 595-604.
- Mehta, K.D. and Gupta, R.S. (1986). Novel mutants of CHO cells resistant to adenosine analogs and containing biochemically altered form of adenosine kinase in cell extracts. Som. Cell. & Mol. Genet. 12: 21-31.
- Mehta, K.D. and Gupta, R.S. (1985). Chinese hamster ovary cells mutants specifically affected in the phosphorylation of C-purine nucleosides. Can. J. Biochem. Cell. Biol. 63: 1044-1048.
- Mehta, K.D. and Gupta, R.S. (1983). Formycin B-resistant mutants of Chinese hamster ovary cells: Novel genetic and biochemical phenotype affecting adenosine kinase. Mol. Cell. Biol. 3: 1468-1477.
- Gupta, R.S., and Siminovitch, K.L. (1978). Genetic and biochemical studies with the adenosine analogs toyocamycin and tubercidin: Mutation at the adenosine kinase locus in Chinese hamster cells. Somat. Cell Genet. 4: 715-736.